Biomechanical Joint Model  Author: Anderson Maciel

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comemoleculescartilage.h

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/***************************************************************************
 *   Copyright (C) 2002 by Anderson Maciel                                 *
 *   andi.maciel@gmail.com                                                 *
 *                                                                         *
 *   This program is free software; you can redistribute it and/or modify  *
 *   it under the terms of the GNU General Public License as published by  *
 *   the Free Software Foundation; either version 2 of the License, or     *
 *   (at your option) any later version.                                   *
 *                                                                         *
 *   This program is distributed in the hope that it will be useful,       *
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 *   GNU General Public License for more details.                          *
 *                                                                         *
 *   You should have received a copy of the GNU General Public License     *
 *   along with this program; if not, write to the                         *
 *   Free Software Foundation, Inc.,                                       *
 *   59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.             *
 **************************************************************************/

//
//  PROJECT.....: CO-ME
//  RESPONSIBLE.: 
//
//  AUTHOR......: Anderson Maciel
//  DATE........: August/05/2002
//  DESCRIPTION.: Class declaration.
//

#ifndef __COME_MOLECULESCARTILAGE_H     
#define __COME_MOLECULESCARTILAGE_H     



#include <bio/comemoleculestissue.h>
#include <bio/comecartilage.h>
#include <libgeom/geom.h>

using namespace geom;

class COME_MoleculesCartilage : public COME_Cartilage {

protected:
        
        COME_MoleculesTissue    *tissue;
        string                  deformationFile;
        ARRAY2D         *matrixJinv;
        
public:

        COME_MoleculesCartilage();
        ~COME_MoleculesCartilage();

        void    setTissue( COME_MoleculesTissue *tissueN );
        void    setDeformationFile( string defFile );

        COME_MoleculesTissue    *getTissue();
        string                          getDeformationFile();
        ARRAY2D                         *getMatrixJinv();

        bool    update( double timestep, double simClock );
        void    updateSurface( bool regenerate );
        void    updateSurface( double skinSphere, double stiff, double resolution );
        void    updateSkin();

        void    getEnvelop( COME_Point3D& mins, COME_Point3D& maxs );
        void    respondCollision();
        
        void    initializeSkinning();
        void    discretize( int type, double dist, double radius );
        void    initializeJacobian();
};

#endif // __COME_MOLECULESCARTILAGE_H

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