Biomechanical Joint Model
Author: Anderson Maciel

COME_MoleculesCartilage Class Reference

#include <comemoleculescartilage.h>

Inherits COME_Cartilage.

Inheritance diagram for COME_MoleculesCartilage:

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[legend]List of all members.


Public Member Functions
	COME_MoleculesCartilage ()
	~COME_MoleculesCartilage ()
void	setTissue (COME_MoleculesTissue *tissueN)
void	setDeformationFile (string defFile)
COME_MoleculesTissue *	getTissue ()
string	getDeformationFile ()
ARRAY2D *	getMatrixJinv ()
bool	update (double timestep, double simClock)
void	updateSurface (bool regenerate)
void	updateSurface (double skinSphere, double stiff, double resolution)
void	updateSkin ()
void	getEnvelop (COME_Point3D &mins, COME_Point3D &maxs)
void	respondCollision ()
void	initializeSkinning ()
void	discretize (int type, double dist, double radius)
void	initializeJacobian ()
Protected Attributes
COME_MoleculesTissue *	tissue
string	deformationFile
ARRAY2D *	matrixJinv

Detailed Description

Definition at line 43 of file comemoleculescartilage.h.

Constructor & Destructor Documentation

COME_MoleculesCartilage::COME_MoleculesCartilage ( )

Default constructor.
Definition at line 50 of file comemoleculescartilage.cpp.
References COME_BioStructure::collisionRadius, COME_BioStructure::globalHooke, COME_BioStructure::hashTable, COME::setParent(), COME_BioStructure::surface, and tissue.
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COME_MoleculesCartilage::~COME_MoleculesCartilage ( )

Definition at line 60 of file comemoleculescartilage.cpp.

Member Function Documentation

void COME_MoleculesCartilage::discretize ( int type,

double dist,

double radius

)

Definition at line 273 of file comemoleculescartilage.cpp.
References BEST, COME_Mesh::findIntersections(), COME_Mesh::getEnvelop(), COME_Point3D::getX(), COME_Point3D::getY(), COME_Point3D::getZ(), COME::setParent(), COME_BioStructure::surface, and tissue.
Referenced by COME_Discretizer::updateSampling().
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string COME_MoleculesCartilage::getDeformationFile ( )

Definition at line 80 of file comemoleculescartilage.cpp.
References deformationFile.

void COME_MoleculesCartilage::getEnvelop ( COME_Point3D & mins,

COME_Point3D & maxs

) [virtual]

This method returns the 3D rectangular envelop of this organ.
Implements COME_Cartilage.
Definition at line 199 of file comemoleculescartilage.cpp.
References COME_MoleculesTissue::getEnvelop(), and tissue.
Referenced by COME_Mechatester::fileOpen(), and updateSurface().
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ARRAY2D * COME_MoleculesCartilage::getMatrixJinv ( )

Definition at line 92 of file comemoleculescartilage.cpp.
References matrixJinv.

COME_MoleculesTissue * COME_MoleculesCartilage::getTissue ( ) [virtual]

Implements COME_Cartilage.
Definition at line 86 of file comemoleculescartilage.cpp.
References tissue.
Referenced by COME_Scenario::addOrganFromFile(), COME_Mechatester::clickedCheck(), COME_Mechatester::clickedReset(), COME_Mechatester::clickedStartSim(), COME_Scenario::createPrecalculatedFiles(), and COME_Mechatester::updateClampIntersections().

void COME_MoleculesCartilage::initializeJacobian ( )

Definition at line 389 of file comemoleculescartilage.cpp.
References geom::array2d_creation(), geom::array2d_nul(), COME_MoleculesTissue::getShape(), COME_Mesh::getVerticesPt(), matrixJinv, COME_BioStructure::surface, and tissue.
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void COME_MoleculesCartilage::initializeSkinning ( )

This method calls anchorToMolecules to select the n nearest molecules to a vertex on the surface. Then, for the anchors of every vertex calls initializeOrthogonalNeighbors to create a local frame on the molecule.
Build the J matrix containing the molecule X vertex dependency
Definition at line 234 of file comemoleculescartilage.cpp.
References COME_BioStructure::getSurface(), IMPLICIT, COME::setParent(), COME_BioStructure::surface, and updateSurface().
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void COME_MoleculesCartilage::respondCollision ( ) [virtual]

Implements COME_BioStructure.
Definition at line 349 of file comemoleculescartilage.cpp.
References COME_MoleculesTissue::getShape(), and tissue.
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void COME_MoleculesCartilage::setDeformationFile ( string defFile )

Definition at line 73 of file comemoleculescartilage.cpp.
References deformationFile.

void COME_MoleculesCartilage::setTissue ( COME_MoleculesTissue * tissueN )

Definition at line 66 of file comemoleculescartilage.cpp.
References COME::setParent(), and tissue.
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bool COME_MoleculesCartilage::update ( double timestep,

double simClock

) [virtual]

* visco */ tissue->flow( timestep );
* skinning */
* visco */ tissue->flow( timestep );
* skinning */
Implements COME_Cartilage.
Definition at line 208 of file comemoleculescartilage.cpp.
References deformationFile, COME::flagNumIntegration, RUNGE_KUTTA4, tissue, COME_MoleculesTissue::update(), and updateSkin().
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void COME_MoleculesCartilage::updateSkin ( ) [virtual]

Implements COME_BioStructure.
Definition at line 99 of file comemoleculescartilage.cpp.
References COME_BioStructure::surface, and COME_Mesh::updateSkin().
Referenced by update().
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void COME_MoleculesCartilage::updateSurface ( double skinSphere,

double stiff,

double resolution

)

This method re-generates the boundary mesh of the cartilage for visualization.
Definition at line 136 of file comemoleculescartilage.cpp.

void COME_MoleculesCartilage::updateSurface ( bool regenerate ) [virtual]

This method re-generates the boundary mesh of the cartilage for visualization.
Implements COME_Cartilage.
Definition at line 108 of file comemoleculescartilage.cpp.
References COME_Mesh::estabilishLinkVerticesFaces(), getEnvelop(), COME_MoleculesTissue::getRadiusAverage(), IMPLICIT, COME_BioStructure::surface, tissue, and COME_BioStructure::volume.
Referenced by initializeSkinning().
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Member Data Documentation

string COME_MoleculesCartilage::deformationFile [protected]

Definition at line 48 of file comemoleculescartilage.h.
Referenced by getDeformationFile(), setDeformationFile(), and update().

ARRAY2D* COME_MoleculesCartilage::matrixJinv [protected]

Definition at line 49 of file comemoleculescartilage.h.
Referenced by getMatrixJinv(), and initializeJacobian().

COME_MoleculesTissue* COME_MoleculesCartilage::tissue [protected]

Definition at line 47 of file comemoleculescartilage.h.
Referenced by COME_MoleculesCartilage(), discretize(), getEnvelop(), getTissue(), initializeJacobian(), respondCollision(), setTissue(), update(), and updateSurface().

The documentation for this class was generated from the following files:

Generated on Thu Dec 1 10:14:25 2005 for COME - Biomechanical Joint Model by

1.4.5

COME_MoleculesCartilage Class Reference

Public Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation