Biomechanical Joint Model  Author: Anderson Maciel

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come.h File Reference

#include <stdio.h>
#include <string.h>
#include <list>
#include <string>
#include <vector>
#include <algorithm>
#include <iostream>
#include <zthread/Mutex.h>

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Namespaces
namespace	std
Classes
class	COME
Defines
#define	_MODELJOINT_APP
#define	MALE   true
	patient gender
#define	FEMALE   false
#define	PAST   false
	simulation direction
#define	FUTURE   true
#define	MARCHING_CUBES   0
	iv file loading and converting to molecules
#define	VERTICES   1
#define	BEST   2
#define	IMPLICIT   true
	mesh generation deformation
#define	DEFORM   false
#define	MESH   0
	collision detection
#define	SPHERES   1
#define	HYBRID   2
#define	DISPLACEMENT   3
#define	NO_COLLISION   4
#define	NEIGHBORS   5
#define	SPHERICAL_SLIDING   6
#define	ENVELOPE   0
	first level of collision detection
#define	VCOLLIDE   1
#define	CARTILAGE   0
	type of tissue
#define	BONE   1
#define	LIGAMENT   2
#define	MUSCLE   3
#define	TENDON   4
#define	CLAMP   5
#define	CONTAINER   6
#define	NONE   0
	mode of hookes calculation
#define	VOLUME_TETRAS   1
#define	NUM_CONNECTIONS   2
#define	ANGLES   3
#define	NUMERICALLY   4
#define	NEVER   0
	frequency of hookes calculation
#define	ONCE   1
#define	EVERY_ITERATION   2
#define	NEW   0
	file open modes
#define	UPDATE   1
#define	OFFLINE   0
	simulation types
#define	ONLINE   1
#define	FREE   0
	molecules freedom
#define	CLAMPFIX   1
#define	CLAMPMOBILE   2
#define	M_PI   3.14159265358979323846
	mathematical constants
#define	INFINITE   1.6E+308
#define	EULER   0
	numerical integration
#define	RUNGE_KUTTA4   1

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Define Documentation

#define _MODELJOINT_APP

Compilation specials - to avoid slow code when performance is key, comment constants of other applications. Definition at line 58 of file come.h.

#define ANGLES   3

Definition at line 104 of file come.h.

#define BEST   2

Definition at line 71 of file come.h. Referenced by COME_MoleculesCartilage::discretize(), and COME_Discretizer::updateSampling().

#define BONE   1

Definition at line 93 of file come.h. Referenced by COME_Xml::loadMoleculeOrgan(), and COME_Scenario::loadOrganMesh().

#define CARTILAGE   0

type of tissue Definition at line 92 of file come.h. Referenced by COME_Discretizer::fileOpen(), COME_Xml::loadMoleculeOrgan(), and COME_Scenario::loadOrganMesh().

#define CLAMP   5

Definition at line 97 of file come.h. Referenced by COME_Mechatester::COME_Mechatester(), and COME_Scenario::loadOrganMesh().

#define CLAMPFIX   1

Definition at line 122 of file come.h. Referenced by COME_Molecule::intersectClampFix(), and COME_Mechatester::updateClampIntersections().

#define CLAMPMOBILE   2

Definition at line 123 of file come.h. Referenced by COME_Molecule::intersectClampMobile(), and COME_Mechatester::updateClampIntersections().

#define CONTAINER   6

Definition at line 98 of file come.h.

#define DEFORM   false

Definition at line 76 of file come.h.

#define DISPLACEMENT   3

Definition at line 82 of file come.h. Referenced by COME_ModelJoint::changedCollisionTreatment().

#define ENVELOPE   0

first level of collision detection Definition at line 88 of file come.h. Referenced by COME_Collide::COME_Collide(), and COME_Collide::detectContacts().

#define EULER   0

numerical integration Definition at line 130 of file come.h. Referenced by COME_ModelJoint::changedNumIntegration(), and COME_Mechatester::changedNumIntegration().

#define EVERY_ITERATION   2

Definition at line 110 of file come.h.

#define FEMALE   false

Definition at line 62 of file come.h.

#define FREE   0

molecules freedom Definition at line 121 of file come.h. Referenced by COME_Molecule::intersectClamp(), and COME_Mechatester::updateClampIntersections().

#define FUTURE   true

Definition at line 66 of file come.h. Referenced by COME_Simulator::run().

#define HYBRID   2

Definition at line 81 of file come.h. Referenced by COME_ModelJoint::changedCollisionTreatment(), and COME_Collide::detectContacts().

#define IMPLICIT   true

mesh generation deformation Definition at line 75 of file come.h. Referenced by COME_MoleculesCartilage::initializeSkinning(), COME_MoleculesBone::initializeSkinning(), and COME_MoleculesCartilage::updateSurface().

#define INFINITE   1.6E+308

Definition at line 127 of file come.h. Referenced by COME_Mesh::anchorToMolecules(), COME_BioStructure::fillHashHoles(), COME_Face::getClosestVertexPt(), COME_BioStructure::initializeHashStructure(), and COME_BioStructure::initializeHashStructureRayCasting().

#define LIGAMENT   2

Definition at line 94 of file come.h. Referenced by COME_BioStructure::globalToLocal(), COME_Xml::loadMoleculeOrgan(), and COME_Scenario::loadOrganMesh().

#define M_PI   3.14159265358979323846

mathematical constants Definition at line 126 of file come.h. Referenced by CalculateAngle(), COME_MoleculesTissue::flow(), COME_Face::geoSolidAngle(), COME_Vector3D::getAngle(), COME_PolyaxialJoint::getCurrentAngles(), COME_BioStructure::getHashElement(), COME_Molecule::getLiquidLevel(), COME_Molecule::getPressureArea(), COME_Molecule::getVolume(), COME_Xml::loadIntegrationFile(), geom::polynomial_solve_cubic(), geom::quat_to_axis_angle(), COME_ModelJoint::rotateSelected(), COME_Mechatester::rotateSelected(), and geom::safe_acos().

#define MALE   true

patient gender Definition at line 61 of file come.h. Referenced by COME_Patient::COME_Patient(), and COME_Xml::exportIntegrationFile().

#define MARCHING_CUBES   0

iv file loading and converting to molecules Definition at line 69 of file come.h.

#define MESH   0

collision detection Definition at line 79 of file come.h. Referenced by COME_ModelJoint::changedCollisionTreatment().

#define MUSCLE   3

Definition at line 95 of file come.h.

#define NEIGHBORS   5

Definition at line 84 of file come.h. Referenced by COME_ModelJoint::changedCollisionTreatment(), COME_Collide::COME_Collide(), and COME_ModelJoint::fileLoad_scene().

#define NEVER   0

frequency of hookes calculation Definition at line 108 of file come.h. Referenced by COME_Simulator::COME_Simulator().

#define NEW   0

file open modes Definition at line 113 of file come.h. Referenced by COME_Scenario::createPrecalculatedFiles(), COME_MoleculesTissue::saveDeformationFile(), and COME_Scenario::saveJointIntoFile().

#define NO_COLLISION   4

Definition at line 83 of file come.h. Referenced by COME_ModelJoint::changedCollisionTreatment().

#define NONE   0

mode of hookes calculation Definition at line 101 of file come.h. Referenced by COME_Simulator::COME_Simulator().

#define NUM_CONNECTIONS   2

Definition at line 103 of file come.h.

#define NUMERICALLY   4

Definition at line 105 of file come.h. Referenced by COME_MoleculesTissue::recalculateAllSpringConstants().

#define OFFLINE   0

simulation types Definition at line 117 of file come.h. Referenced by COME_ModelJoint::exportPrecalculationChanged().

#define ONCE   1

Definition at line 109 of file come.h.

#define ONLINE   1

Definition at line 118 of file come.h.

#define PAST   false

simulation direction Definition at line 65 of file come.h.

#define RUNGE_KUTTA4   1

Definition at line 131 of file come.h. Referenced by COME_ModelJoint::changedNumIntegration(), COME_Mechatester::changedNumIntegration(), and COME_MoleculesCartilage::update().

#define SPHERES   1

Definition at line 80 of file come.h. Referenced by COME_ModelJoint::changedCollisionTreatment().

#define SPHERICAL_SLIDING   6

Definition at line 85 of file come.h. Referenced by COME_ModelJoint::changedCollisionTreatment().

#define TENDON   4

Definition at line 96 of file come.h.

#define UPDATE   1

Definition at line 114 of file come.h.

#define VCOLLIDE   1

Definition at line 89 of file come.h.

#define VERTICES   1

Definition at line 70 of file come.h.

#define VOLUME_TETRAS   1

Definition at line 102 of file come.h. Referenced by COME_MoleculeLink::recalculateSpring().

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