07/16/2020
Differential Expression Results - Full Table
| Legend | Name | Description |
|---|---|---|
| A | List of Comparison Results | Tables of comparison results, which can be selected by the mouse click. |
| B | Pin first column | Keeps the first column in the view |
| C | Show/Hide columns | Show or hide certain columns |
| D | Order columns | Sort the data based on the values from a column. |
| E | Split/Join column entries with composed fields | Splits the values containing a separator, resulting in a multifield column. |
| F | Current results table | Table being displayed. |
| G | Filter | Filters the table rows based on the user's criteria. |
| H | Applied filters | Shows already applied filters. |
| I | Export table | Exports the current table to an external file (main button), or all tables to a output directory (side button, "Export All Tables"). |
| J | Overview plot | Plot that summarizes the amount of differentially expressed genes based on the current filtered results. |
| Legend | Name | Description |
|---|---|---|
| A | Proportion (Pie Chart) |
| Legend | Name | Description |
|---|---|---|
| A | Scatter Plot | |
| B | Mouse cursor coordinates | |
| C | Displayed attribute in Tooltip |
| Legend | Name | Description |
|---|---|---|
| A | Volcano plot |
Advanced Options
| Legend | Name | Description |
|---|
Split Attribute Column Options
| Legend | Name | Description |
|---|---|---|
| A | Split option | Split - Splits the entries containing the separator into multi-field cells. Concatenate - Will join multi-field cells. |
| B | Separator | Separator between multi-field values. |
| C | Target columns |
Advanced Options
| Legend | Name | Description |
|---|---|---|
| A | Filter logFC enabled | |
| B | Absolute logFC | Filter for both positive and negative values |
| C | LogFC Parameter | Value and conditional to the filter |
| D | P-value | Use the corrected p-value column |
| E | Corrected | Uses the corrected p-value column |
| F | LogFC Parameter | Value and conditional to the filter |
| G | Custom filters | Build a custom filter to obtain only the desired parameters. |
Remarks
Each comparison result has the following columns:
- logFC: estimate of the log2-fold-change between Experimental and Control (or next step vs last step in temporal comparisons);
- AveExpr: average log2-expression for the probe over all arrays and channels;
- t: moderated t-statistic;
- P.Value: raw p-value
- adj.P.Value: adjusted p-value or q-value
- B: log-odds that the gene is differentially expressed (omitted for TREAT option)